Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| insulinase family protein | DW150_06875 | Not Available | Positive | 1734700 - 1735944 | 47305.5 |
| mate family efflux transporter | DW150_06880 | Not Available | Positive | 1736033 - 1737349 | 48824.5 |
| response regulator | DW150_06885 | Not Available | Positive | 1737357 - 1739924 | 96981.3 |
| sigma-54-dependent fis family transcriptional regulator | DW150_06890 | Not Available | Positive | 1740026 - 1741411 | 51225.5 |
| hypothetical protein | DW150_06895 | Not Available | Positive | 1741698 - 1742003 | 10854.0 |
| rna pseudouridine synthase | DW150_06900 | Not Available | Negative | 1742068 - 1742739 | 25535.9 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DW150_06905 | Not Available | Negative | 1742741 - 1743487 | 25964.4 |
| tetr/acrr family transcriptional regulator | DW150_06910 | Not Available | Negative | 1743519 - 1744118 | 22662.3 |
| Trna-met | Not Available | Not Available | Positive | 1744350 - 1744422 | Not Available |
| glycoside hydrolase family 2 protein | DW150_06920 | Not Available | Positive | 1744520 - 1747198 | 101223.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

