Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fucose isomerase | DW150_06770 | Not Available | Negative | 1702059 - 1703483 | 52382.0 |
| glycerol kinase glpk | DW150_06775 | Not Available | Negative | 1703517 - 1705013 | 55310.5 |
| transketolase family protein | DW150_06780 | Not Available | Negative | 1705039 - 1705977 | 33720.7 |
| transketolase | DW150_06785 | Not Available | Negative | 1705967 - 1706812 | 31482.8 |
| deor/glpr transcriptional regulator | DW150_06790 | Not Available | Negative | 1707155 - 1707910 | 27350.1 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | DW150_06795 | Not Available | Negative | 1707922 - 1708536 | 22215.8 |
| duf5060 domain-containing protein | DW150_06800 | Not Available | Negative | 1708660 - 1710264 | 61927.9 |
| hybrid sensor histidine kinase/response regulator | DW150_06805 | Not Available | Negative | 1710429 - 1714751 | 165008.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_06810 | Not Available | Negative | 1714928 - 1716625 | 64611.3 |
| susc/raga family tonb-linked outer membrane protein | DW150_06815 | Not Available | Negative | 1716645 - 1719914 | 122431.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

