Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | DW150_06660 | Not Available | Positive | 1680216 - 1681448 | 47242.4 |
| hypothetical protein | DW150_06665 | Not Available | Positive | 1681466 - 1681858 | 14562.8 |
| hypothetical protein | DW150_06670 | Not Available | Positive | 1681855 - 1682187 | 12670.4 |
| mobilization protein | DW150_06675 | Not Available | Positive | 1682444 - 1683811 | 52562.8 |
| duf1266 domain-containing protein | DW150_06680 | Not Available | Positive | 1684147 - 1684884 | 28206.4 |
| 23s ribosomal rna methyltransferase erm | DW150_06690 | Not Available | Positive | 1685256 - 1686056 | 30314.2 |
| hypothetical protein | DW150_06695 | Not Available | Positive | 1686439 - 1687179 | 28692.5 |
| duf4948 domain-containing protein | DW150_06700 | Not Available | Positive | 1687186 - 1687767 | 22037.3 |
| crp/fnr family transcriptional regulator | DW150_06710 | Not Available | Negative | 1688106 - 1688690 | 22225.6 |
| mate family efflux transporter | DW150_06715 | Not Available | Negative | 1688726 - 1690078 | 49608.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

