Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1015 domain-containing protein | DW150_15740 | Not Available | Positive | 3811086 - 3812333 | 47015.9 |
| dmt family transporter | DW150_15745 | Not Available | Positive | 3812571 - 3813485 | 32962.2 |
| beta-n-acetylhexosaminidase | DW150_15750 | Not Available | Positive | 3813531 - 3815852 | 87183.3 |
| rna-binding protein | DW150_15755 | Not Available | Negative | 3816041 - 3816286 | 9198.03 |
| ferredoxin | DW150_15760 | Not Available | Positive | 3816580 - 3817110 | 19146.3 |
| cof-type had-iib family hydrolase | DW150_15765 | Not Available | Negative | 3817100 - 3817906 | 30316.9 |
| dna recombination protein rmuc | DW150_15770 | Not Available | Positive | 3818002 - 3819237 | 46973.8 |
| methyltransferase | DW150_15775 | Not Available | Positive | 3819255 - 3819923 | 24548.2 |
| hamp domain-containing protein | DW150_15780 | Not Available | Negative | 3819994 - 3821463 | 55090.1 |
| sensor protein kdpd | DW150_15785 | Not Available | Negative | 3821476 - 3822603 | 42627.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

