Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit beta | DW150_15375 | Not Available | Positive | 3719461 - 3721923 | 91146.9 |
| yebc/pmpr family dna-binding transcriptional regulator | DW150_15380 | Not Available | Positive | 3721957 - 3722697 | 27834.7 |
| tigr03905 family tscpd domain-containing protein | DW150_15385 | Not Available | Positive | 3722699 - 3722944 | 9080.04 |
| merr family transcriptional regulator | DW150_15395 | Not Available | Negative | 3724058 - 3724405 | 13742.9 |
| m23 family peptidase | DW150_15400 | Not Available | Negative | 3724439 - 3725407 | 36161.5 |
| alanine--trna ligase | DW150_15405 | Not Available | Positive | 3725545 - 3728163 | 97409.6 |
| duf2075 domain-containing protein | DW150_15410 | Not Available | Negative | 3728444 - 3729862 | 53907.7 |
| hypothetical protein | DW150_15415 | Not Available | Positive | 3729960 - 3730646 | 25464.7 |
| duf3822 family protein | DW150_15420 | Not Available | Positive | 3730649 - 3731473 | 32430.8 |
| methyltransferase domain-containing protein | DW150_15425 | Not Available | Positive | 3731464 - 3732024 | 21377.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

