Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-1,2-fucosyltransferase | DW150_15265 | Not Available | Negative | 3695606 - 3696430 | 32565.3 |
| hypothetical protein | DW150_15270 | Not Available | Negative | 3696451 - 3697452 | 39513.9 |
| o-antigen ligase domain-containing protein | DW150_15275 | Not Available | Negative | 3697485 - 3698633 | 43688.6 |
| lipopolysaccharide biosynthesis protein | DW150_15280 | Not Available | Negative | 3698644 - 3700200 | 58573.9 |
| hypothetical protein | DW150_15285 | Not Available | Positive | 3700846 - 3701094 | 9456.5 |
| hypothetical protein | DW150_15290 | Not Available | Negative | 3701249 - 3701632 | 14845.0 |
| upxy family transcription antiterminator | DW150_15295 | Not Available | Negative | 3701715 - 3702263 | 21220.2 |
| hypothetical protein | DW150_15305 | Not Available | Positive | 3702880 - 3703065 | 7309.95 |
| duf2442 domain-containing protein | DW150_15310 | Not Available | Negative | 3703259 - 3703675 | 16026.2 |
| duf3791 domain-containing protein | DW150_15315 | Not Available | Positive | 3703986 - 3704414 | 15954.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

