Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | DW150_15165 | Not Available | Negative | 3668708 - 3669637 | 35762.2 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DW150_15170 | Not Available | Negative | 3669682 - 3671103 | 54032.2 |
| pyruvate, phosphate dikinase | DW150_15175 | Not Available | Positive | 3671302 - 3674028 | 100098.0 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | DW150_15180 | Not Available | Positive | 3674161 - 3676017 | 68620.1 |
| hypothetical protein | DW150_15185 | Not Available | Positive | 3676294 - 3676731 | 17409.3 |
| abc transporter permease | DW150_15190 | Not Available | Negative | 3676793 - 3679105 | 87524.2 |
| abc transporter atp-binding protein | DW150_15195 | Not Available | Negative | 3679125 - 3679799 | 24853.2 |
| abc transporter permease | DW150_15200 | Not Available | Negative | 3679834 - 3682143 | 86290.6 |
| m3 family peptidase | DW150_15205 | Not Available | Positive | 3682465 - 3684570 | 79091.9 |
| acyltransferase | DW150_15210 | Not Available | Positive | 3684751 - 3685911 | 44268.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

