Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1460 domain-containing protein | DW150_15115 | Not Available | Negative | 3655281 - 3656165 | 33220.4 |
| biotin/lipoyl-binding protein | DW150_15120 | Not Available | Negative | 3656290 - 3658065 | 66719.8 |
| rna polymerase sigma factor | DW150_15125 | Not Available | Negative | 3658255 - 3658758 | 19667.6 |
| trimeric intracellular cation channel family protein | DW150_15130 | Not Available | Negative | 3658917 - 3659531 | 22186.8 |
| udp-n-acetyl glucosamine 2-epimerase | DW150_15135 | Not Available | Positive | 3659615 - 3660703 | 40279.0 |
| duf3078 domain-containing protein | DW150_15140 | Not Available | Negative | 3660804 - 3662198 | 53508.6 |
| ctp synthase | DW150_15145 | Not Available | Positive | 3662408 - 3664006 | 60109.4 |
| membrane protein insertase yidc | DW150_15150 | Not Available | Positive | 3664046 - 3665911 | 70969.0 |
| hypothetical protein | DW150_15155 | Not Available | Negative | 3665841 - 3666074 | 8755.23 |
| s9 family peptidase | DW150_15160 | Not Available | Positive | 3666139 - 3668259 | 79938.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

