Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_15065 | Not Available | Negative | 3644360 - 3645187 | 31897.3 |
| penicillin-binding protein | DW150_15070 | Not Available | Negative | 3645394 - 3647721 | 88389.2 |
| aspartate carbamoyltransferase | DW150_15075 | Not Available | Positive | 3647882 - 3648823 | 36260.7 |
| aspartate carbamoyltransferase regulatory subunit | DW150_15080 | Not Available | Positive | 3648832 - 3649299 | 17393.3 |
| flavin reductase family protein | DW150_15085 | Not Available | Positive | 3649305 - 3649892 | 21983.6 |
| port family protein | DW150_15090 | Not Available | Positive | 3649902 - 3650621 | 27346.3 |
| serine hydroxymethyltransferase | DW150_15095 | Not Available | Positive | 3650869 - 3652149 | 46859.6 |
| mate family efflux transporter | DW150_15100 | Not Available | Positive | 3652347 - 3653690 | 49271.2 |
| ompa family protein | DW150_15105 | Not Available | Positive | 3653739 - 3654458 | 24484.1 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DW150_15110 | Not Available | Positive | 3654587 - 3655309 | 27893.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

