Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW150_14910 | Not Available | Positive | 3608004 - 3610322 | 87050.8 |
| duf4980 domain-containing protein | DW150_14915 | Not Available | Positive | 3610471 - 3612354 | 71002.5 |
| mfs transporter | DW150_14920 | Not Available | Positive | 3612370 - 3613530 | 41844.0 |
| carbohydrate kinase | DW150_14925 | Not Available | Positive | 3613558 - 3614445 | 32432.2 |
| response regulator | DW150_14930 | Not Available | Positive | 3614641 - 3617367 | 102758.0 |
| amino acid-binding protein | DW150_14935 | Not Available | Negative | 3617410 - 3617838 | 15643.0 |
| phenylacetate--coa ligase | DW150_14940 | Not Available | Negative | 3617850 - 3619148 | 49256.5 |
| duf3256 family protein | DW150_14945 | Not Available | Positive | 3619263 - 3619904 | 24228.7 |
| 50s ribosomal protein l31 type b | DW150_14950 | Not Available | Negative | 3619993 - 3620247 | 9656.59 |
| class ii fructose-1,6-bisphosphate aldolase | DW150_14955 | Not Available | Positive | 3620576 - 3621580 | 36444.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

