Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rip metalloprotease rsep | DW150_14860 | Not Available | Positive | 3596112 - 3597455 | 50885.2 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DW150_14865 | Not Available | Negative | 3598029 - 3598487 | 17410.7 |
| anaerobic ribonucleoside triphosphate reductase | DW150_14870 | Not Available | Negative | 3598493 - 3600769 | 86287.2 |
| hemolysin iii | DW150_14875 | Not Available | Negative | 3601064 - 3601699 | 23650.2 |
| hd domain-containing protein | DW150_14880 | Not Available | Negative | 3601704 - 3603206 | 57456.8 |
| hypothetical protein | DW150_14885 | Not Available | Positive | 3603224 - 3604048 | 30836.1 |
| holliday junction branch migration protein ruva | DW150_14890 | Not Available | Negative | 3604134 - 3604727 | 21141.8 |
| diaminopimelate dehydrogenase | DW150_14895 | Not Available | Positive | 3604903 - 3605802 | 32291.9 |
| prolipoprotein diacylglyceryl transferase | DW150_14900 | Not Available | Positive | 3605909 - 3606715 | 31252.6 |
| dna-binding protein | DW150_14905 | Not Available | Negative | 3606757 - 3607368 | 22948.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

