Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinate-nucleotide adenylyltransferase | DW150_14810 | Not Available | Negative | 3588480 - 3589052 | 22159.7 |
| hypothetical protein | DW150_14815 | Not Available | Negative | 3589034 - 3589216 | 6793.87 |
| guanylate kinase | DW150_14820 | Not Available | Negative | 3589221 - 3589790 | 21339.4 |
| yicc family protein | DW150_14825 | Not Available | Negative | 3589837 - 3590712 | 33911.7 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DW150_14830 | Not Available | Positive | 3590808 - 3591497 | 25285.7 |
| duf4290 domain-containing protein | DW150_14835 | Not Available | Positive | 3591544 - 3592170 | 24903.9 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DW150_14840 | Not Available | Positive | 3592189 - 3593493 | 47592.0 |
| 16s rrna processing protein rimm | DW150_14845 | Not Available | Positive | 3593505 - 3594023 | 19825.8 |
| m23 family peptidase | DW150_14850 | Not Available | Positive | 3594042 - 3594899 | 32093.4 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DW150_14855 | Not Available | Positive | 3594907 - 3596055 | 42352.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

