Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s9 | DW150_14760 | Not Available | Positive | 3581098 - 3581484 | 14527.7 |
| 30s ribosomal protein s2 | DW150_14765 | Not Available | Positive | 3581617 - 3582456 | 30564.9 |
| elongation factor ts | DW150_14770 | Not Available | Positive | 3582589 - 3583578 | 35504.8 |
| translation initiation factor | DW150_14775 | Not Available | Negative | 3583638 - 3583976 | 12663.2 |
| redox-sensing transcriptional repressor rex | DW150_14780 | Not Available | Positive | 3584094 - 3584744 | 24251.6 |
| faa hydrolase family protein | DW150_14785 | Not Available | Positive | 3584749 - 3585366 | 23340.1 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DW150_14790 | Not Available | Positive | 3585363 - 3585845 | 17376.1 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | DW150_14795 | Not Available | Negative | 3585896 - 3586786 | 32722.7 |
| metallophosphoesterase | DW150_14800 | Not Available | Positive | 3586860 - 3587699 | 31432.6 |
| duf3836 domain-containing protein | DW150_14805 | Not Available | Positive | 3587927 - 3588397 | 18241.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

