Phocaeicola vulgatus strain AM13-21

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM13-21 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. This strain is host-associated, specifically found in Homo sapiens, and is characterized by a free-living biotic relationship. Its cellular arrangement consists of singles, and it does not exhibit mobility, as indicated by the absence of flagella, despite their presence in the species description. The strain is mesophilic, which suggests that it grows optimally at moderate temperatures. Phocaeicola vulgatus strain AM13-21 contains one replicon and is surrounded by two membranes, a trait commonly associated with certain bacterial groups. The accessions for this strain are cataloged under QRLF00000000.1. The ecological role of Phocaeicola vulgatus strain AM13-21 highlights its significance in the human microbiome. As a member of the gut microbiota, it likely contributes to various biological processes, including digestion and maintaining gut health. The presence of this anaerobic bacterium underscores the complexity and interdependence of microbial communities within human hosts, emphasizing the importance of understanding such organisms in the context of human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM13-21

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM13-21
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM13-21


Gene Summary

Adenine Count

1539821 bp

Thymine Count

1499100 bp

Guanine Count

1070173 bp

Cytosine Count

1133878 bp

Genome Length

5243870 bp

Protein-coding Genes

4129 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s9DW150_14760Not AvailablePositive3581098 - 358148414527.7
30s ribosomal protein s2DW150_14765Not AvailablePositive3581617 - 358245630564.9
elongation factor tsDW150_14770Not AvailablePositive3582589 - 358357835504.8
translation initiation factorDW150_14775Not AvailableNegative3583638 - 358397612663.2
redox-sensing transcriptional repressor rexDW150_14780Not AvailablePositive3584094 - 358474424251.6
faa hydrolase family proteinDW150_14785Not AvailablePositive3584749 - 358536623340.1
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseDW150_14790Not AvailablePositive3585363 - 358584517376.1
1,4-dihydroxy-2-naphthoate polyprenyltransferaseDW150_14795Not AvailableNegative3585896 - 358678632722.7
metallophosphoesteraseDW150_14800Not AvailablePositive3586860 - 358769931432.6
duf3836 domain-containing proteinDW150_14805Not AvailablePositive3587927 - 358839718241.9

Displaying genes 2831 – 2840 of 4204 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.