Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | DW150_14710 | Not Available | Positive | 3570587 - 3570952 | 14299.2 |
| aminopeptidase | DW150_14715 | Not Available | Negative | 3571044 - 3572537 | 55055.2 |
| mate family efflux transporter | DW150_14720 | Not Available | Positive | 3572700 - 3574049 | 49665.5 |
| adenylosuccinate lyase | DW150_14725 | Not Available | Positive | 3574143 - 3575489 | 50932.1 |
| pseudouridine synthase | DW150_14730 | Not Available | Positive | 3575565 - 3577031 | 56168.9 |
| asparagine--trna ligase | DW150_14735 | Not Available | Positive | 3577054 - 3578457 | 53432.1 |
| duf4488 domain-containing protein | DW150_14740 | Not Available | Positive | 3578620 - 3579114 | 18612.9 |
| zeta toxin | DW150_14745 | Not Available | Positive | 3579520 - 3580095 | 21483.9 |
| hypothetical protein | DW150_14750 | Not Available | Positive | 3580085 - 3580330 | 9041.7 |
| 50s ribosomal protein l13 | DW150_14755 | Not Available | Positive | 3580630 - 3581091 | 17129.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

