Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m20/m25/m40 family metallo-hydrolase | DW150_14505 | Not Available | Negative | 3524059 - 3525123 | 39122.8 |
| long-chain fatty acid--coa ligase | DW150_14510 | Not Available | Positive | 3525337 - 3527142 | 68354.2 |
| peptide chain release factor 2 | DW150_14515 | Not Available | Positive | 3527200 - 3528315 | 42519.2 |
| cyth domain-containing protein | DW150_14520 | Not Available | Positive | 3528610 - 3529080 | 18287.6 |
| tonb-dependent receptor | DW150_14525 | Not Available | Positive | 3529170 - 3531644 | 91595.5 |
| rna polymerase sigma factor | DW150_14530 | Not Available | Positive | 3531813 - 3532316 | 19793.6 |
| hypothetical protein | DW150_14535 | Not Available | Negative | 3532397 - 3532783 | 14804.4 |
| sodium-dependent transporter | DW150_14540 | Not Available | Positive | 3532879 - 3534243 | 49139.4 |
| helix-hairpin-helix domain-containing protein | DW150_14545 | Not Available | Positive | 3534251 - 3535153 | 35330.7 |
| alkaline phosphatase | DW150_14550 | Not Available | Negative | 3535150 - 3536568 | 51571.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

