Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hdig domain-containing protein | DW150_14455 | Not Available | Negative | 3511681 - 3513738 | 79117.8 |
| glutamate--trna ligase | DW150_14460 | Not Available | Positive | 3513820 - 3515337 | 57877.2 |
| 3-deoxy-d-manno-octulosonic acid transferase | DW150_14465 | Not Available | Positive | 3515350 - 3516570 | 46750.4 |
| hypothetical protein | DW150_14470 | Not Available | Positive | 3517006 - 3517128 | 4330.13 |
| arac family transcriptional regulator | DW150_14475 | Not Available | Positive | 3517671 - 3518159 | 18884.8 |
| hypothetical protein | DW150_14480 | Not Available | Positive | 3518237 - 3521095 | 105500.0 |
| hypothetical protein | DW150_14485 | Not Available | Positive | 3521234 - 3521890 | 25828.1 |
| nudix domain-containing protein | DW150_14490 | Not Available | Positive | 3521841 - 3522731 | 34142.9 |
| nad-dependent epimerase/dehydratase family protein | DW150_14495 | Not Available | Positive | 3522739 - 3523581 | 31328.1 |
| hypothetical protein | DW150_14500 | Not Available | Positive | 3523688 - 3524053 | 13555.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

