Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic c4-dicarboxylate transporter | DW150_13985 | Not Available | Negative | 3412801 - 3414099 | 45836.2 |
| nitronate monooxygenase | DW150_13990 | Not Available | Positive | 3414341 - 3415291 | 34155.3 |
| sodium:solute symporter | DW150_13995 | Not Available | Negative | 3415514 - 3416947 | 52155.5 |
| dihydrodipicolinate synthase family protein | DW150_14000 | Not Available | Negative | 3416961 - 3417893 | 34084.6 |
| atp-binding cassette domain-containing protein | DW150_14005 | Not Available | Negative | 3418058 - 3419506 | 54974.9 |
| diaminopimelate epimerase | DW150_14010 | Not Available | Positive | 3419890 - 3420732 | 30636.1 |
| ll-diaminopimelate aminotransferase | DW150_14015 | Not Available | Positive | 3420779 - 3422008 | 45711.6 |
| hypothetical protein | DW150_14020 | Not Available | Positive | 3422108 - 3422833 | 26037.3 |
| transcriptional regulator | DW150_14025 | Not Available | Positive | 3422927 - 3423283 | 13522.4 |
| ammonium transporter | DW150_14030 | Not Available | Positive | 3423353 - 3424750 | 49849.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

