Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | DW150_13935 | Not Available | Negative | 3400043 - 3401386 | 50175.1 |
| duf4492 domain-containing protein | DW150_13940 | Not Available | Positive | 3401540 - 3401758 | 8655.77 |
| cytochrome ubiquinol oxidase subunit i | DW150_13945 | Not Available | Positive | 3401782 - 3403284 | 55143.9 |
| cytochrome d ubiquinol oxidase subunit ii | DW150_13950 | Not Available | Positive | 3403454 - 3404599 | 42769.5 |
| 6-phosphogluconolactonase | DW150_13955 | Not Available | Negative | 3404895 - 3405599 | 26191.2 |
| glucose-6-phosphate dehydrogenase | DW150_13960 | Not Available | Negative | 3405656 - 3407164 | 58011.5 |
| phosphogluconate dehydrogenase (nadp(+)-dependent, decarboxylating) | DW150_13965 | Not Available | Negative | 3407213 - 3408649 | 52885.8 |
| dicarboxylate/amino acid:cation symporter | DW150_13970 | Not Available | Positive | 3408734 - 3409912 | 42037.4 |
| hypothetical protein | DW150_13975 | Not Available | Negative | 3410117 - 3411286 | 45146.3 |
| l-asparaginase 2 | DW150_13980 | Not Available | Negative | 3411548 - 3412606 | 37888.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

