Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_13770 | Not Available | Negative | 3350657 - 3350929 | 9756.3 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_13780 | Not Available | Negative | 3351348 - 3352913 | 58928.6 |
| tonb-dependent receptor | DW150_13785 | Not Available | Negative | 3352935 - 3356276 | 123157.0 |
| hypothetical protein | DW150_13790 | Not Available | Positive | 3356257 - 3356487 | 9565.3 |
| creatininase family protein | DW150_13795 | Not Available | Negative | 3356925 - 3357680 | 28416.0 |
| iron-containing alcohol dehydrogenase | DW150_13800 | Not Available | Negative | 3357680 - 3358852 | 42892.9 |
| atp-binding protein | DW150_13805 | Not Available | Positive | 3359076 - 3360347 | 49393.9 |
| duf418 domain-containing protein | DW150_13815 | Not Available | Positive | 3360672 - 3361853 | 45342.9 |
| hypothetical protein | DW150_13820 | Not Available | Negative | 3362002 - 3365469 | 133383.0 |
| glycoside hydrolase family 92 protein | DW150_13825 | Not Available | Positive | 3365757 - 3367973 | 83701.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

