Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_13720 | Not Available | Negative | 3339085 - 3339615 | 20118.1 |
| rna polymerase sigma factor | DW150_13725 | Not Available | Negative | 3339602 - 3340114 | 20025.8 |
| duf4252 domain-containing protein | DW150_13730 | Not Available | Negative | 3340101 - 3340586 | 18462.7 |
| type iii restriction-modification system endonuclease | DW150_13735 | Not Available | Negative | 3340816 - 3343785 | 113736.0 |
| site-specific dna-methyltransferase | DW150_13740 | Not Available | Negative | 3343801 - 3345711 | 72530.4 |
| sdr family nad(p)-dependent oxidoreductase | DW150_13745 | Not Available | Negative | 3345998 - 3346726 | 26981.1 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DW150_13750 | Not Available | Negative | 3346737 - 3348014 | 46994.8 |
| acyl-coa thioesterase | DW150_13755 | Not Available | Positive | 3348137 - 3348580 | 16847.3 |
| duf1573 domain-containing protein | DW150_13760 | Not Available | Negative | 3348645 - 3349373 | 27203.6 |
| duf4221 domain-containing protein | DW150_13765 | Not Available | Negative | 3349370 - 3350533 | 45398.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

