Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod/siga | DW150_13000 | Not Available | Negative | 3207560 - 3208420 | 32805.3 |
| do family serine endopeptidase | DW150_13005 | Not Available | Negative | 3208660 - 3210183 | 53855.6 |
| hypothetical protein | DW150_13010 | Not Available | Negative | 3210316 - 3210501 | 6558.11 |
| duf417 domain-containing protein | DW150_13015 | Not Available | Negative | 3210504 - 3211094 | 21443.6 |
| helix-turn-helix domain-containing protein | DW150_13020 | Not Available | Negative | 3211187 - 3212023 | 32638.4 |
| response regulator | DW150_13025 | Not Available | Positive | 3212339 - 3215476 | 119821.0 |
| hypothetical protein | DW150_13030 | Not Available | Negative | 3215939 - 3217279 | 49653.3 |
| glycoside hydrolase family 28 protein | DW150_13035 | Not Available | Negative | 3217288 - 3218619 | 49454.7 |
| hydrolase | DW150_13040 | Not Available | Negative | 3218686 - 3221442 | 104162.0 |
| six-hairpin glycosidase | DW150_13045 | Not Available | Negative | 3221494 - 3224805 | 126672.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

