Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| twin-arginine translocase subunit tatc | DW150_12895 | Not Available | Positive | 3186928 - 3187731 | 29679.2 |
| hypothetical protein | DW150_12900 | Not Available | Negative | 3187934 - 3188311 | 14254.2 |
| hypothetical protein | DW150_12905 | Not Available | Negative | 3188344 - 3188616 | 10458.1 |
| hypothetical protein | DW150_12910 | Not Available | Negative | 3188627 - 3188929 | 11943.4 |
| hypothetical protein | DW150_12915 | Not Available | Negative | 3188911 - 3189108 | 7413.72 |
| xre family transcriptional regulator | DW150_12920 | Not Available | Positive | 3189478 - 3189792 | 11826.6 |
| n-acetylmuramoyl-l-alanine amidase | DW150_12930 | Not Available | Positive | 3190505 - 3190663 | 5933.43 |
| hypothetical protein | DW150_12935 | Not Available | Positive | 3190711 - 3191023 | 12987.2 |
| aaa family atpase | DW150_12940 | Not Available | Negative | 3191127 - 3192677 | 60360.1 |
| tonb-dependent receptor | DW150_12945 | Not Available | Negative | 3192840 - 3196181 | 123060.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

