Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | DW150_12845 | Not Available | Positive | 3179137 - 3180000 | 33194.2 |
| adenosylmethionine decarboxylase | DW150_12850 | Not Available | Negative | 3179859 - 3181526 | 63034.9 |
| hypothetical protein | DW150_12855 | Not Available | Positive | 3181696 - 3181926 | 9171.14 |
| hypothetical protein | DW150_12860 | Not Available | Negative | 3182098 - 3182307 | 8198.01 |
| eama family transporter | DW150_12865 | Not Available | Positive | 3182332 - 3183225 | 32616.3 |
| arac family transcriptional regulator | DW150_12870 | Not Available | Negative | 3183228 - 3184127 | 34671.7 |
| aldo/keto reductase | DW150_12875 | Not Available | Positive | 3184393 - 3185580 | 43529.4 |
| alpha/beta fold hydrolase | DW150_12880 | Not Available | Positive | 3185590 - 3186618 | 38842.1 |
| twin-arginine translocation signal domain-containing protein | DW150_12885 | Not Available | Positive | 3186615 - 3186698 | 3126.8 |
| twin-arginine translocase tata/tate family subunit | DW150_12890 | Not Available | Positive | 3186729 - 3186926 | 7166.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

