Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tir domain-containing protein | DW150_12620 | Not Available | Positive | 3138014 - 3138562 | 21551.4 |
| hypothetical protein | DW150_12625 | Not Available | Positive | 3138572 - 3139987 | 54006.3 |
| hypothetical protein | DW150_12630 | Not Available | Positive | 3139990 - 3140601 | 23512.4 |
| dead/deah box helicase | DW150_12635 | Not Available | Negative | 3140926 - 3144915 | 151884.0 |
| restriction endonuclease subunit m | DW150_12640 | Not Available | Negative | 3144922 - 3145938 | 39514.7 |
| site-specific integrase | DW150_12645 | Not Available | Negative | 3146190 - 3147401 | 46375.7 |
| hypothetical protein | DW150_12650 | Not Available | Negative | 3147407 - 3148195 | 30086.0 |
| mobilization protein | DW150_12655 | Not Available | Negative | 3148192 - 3149244 | 39646.0 |
| mobilization protein | DW150_12660 | Not Available | Negative | 3149241 - 3149591 | 13374.6 |
| hypothetical protein | DW150_12665 | Not Available | Negative | 3149785 - 3150489 | 25739.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

