Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_12360 | Not Available | Negative | 3100536 - 3101084 | 21462.7 |
| hypothetical protein | DW150_12365 | Not Available | Negative | 3101400 - 3101582 | 7177.93 |
| xre family transcriptional regulator | DW150_12370 | Not Available | Negative | 3101648 - 3102016 | 14143.0 |
| hypothetical protein | DW150_12375 | Not Available | Negative | 3102281 - 3102676 | 15708.5 |
| hypothetical protein | DW150_12380 | Not Available | Positive | 3102833 - 3103027 | 7308.96 |
| hypothetical protein | DW150_12385 | Not Available | Positive | 3103030 - 3103287 | 9703.83 |
| hypothetical protein | DW150_12390 | Not Available | Positive | 3103291 - 3103530 | 9374.31 |
| helix-turn-helix domain-containing protein | DW150_12395 | Not Available | Positive | 3103556 - 3103846 | 11463.0 |
| vrr-nuc domain-containing protein | DW150_12400 | Not Available | Positive | 3103858 - 3104322 | 17959.5 |
| duf3127 domain-containing protein | DW150_12405 | Not Available | Positive | 3104326 - 3104613 | 10748.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

