Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4982 domain-containing protein | DW150_12205 | Not Available | Negative | 3053874 - 3056879 | 114539.0 |
| glycoside hydrolase family 2 protein | DW150_12210 | Not Available | Negative | 3057088 - 3059940 | 106331.0 |
| duf4976 domain-containing protein | DW150_12215 | Not Available | Negative | 3059954 - 3061348 | 51648.4 |
| oligogalacturonide lyase | DW150_12220 | Not Available | Negative | 3061362 - 3062687 | 50008.5 |
| polysaccharide deacetylase family protein | DW150_12225 | Not Available | Negative | 3062781 - 3063758 | 37224.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_12230 | Not Available | Negative | 3064016 - 3066328 | 86111.0 |
| tonb-dependent receptor | DW150_12235 | Not Available | Negative | 3066352 - 3069717 | 124080.0 |
| hypothetical protein | DW150_12240 | Not Available | Negative | 3070738 - 3071526 | 30092.5 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_12245 | Not Available | Negative | 3071610 - 3073307 | 64190.3 |
| susc/raga family tonb-linked outer membrane protein | DW150_12250 | Not Available | Negative | 3073336 - 3076185 | 106731.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

