Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | DW150_12085 | Not Available | Negative | 3018662 - 3020077 | 53140.8 |
| rhamnogalacturonan lyase | DW150_12090 | Not Available | Negative | 3020090 - 3021958 | 69221.7 |
| glycoside hydrolase family 28 protein | DW150_12095 | Not Available | Negative | 3021995 - 3023383 | 52085.8 |
| hypothetical protein | DW150_12100 | Not Available | Negative | 3023447 - 3025798 | 89591.2 |
| hypothetical protein | DW150_12105 | Not Available | Negative | 3026070 - 3028187 | 81134.8 |
| hypothetical protein | DW150_12110 | Not Available | Negative | 3028244 - 3030484 | 84348.9 |
| pectate lyase | DW150_12115 | Not Available | Negative | 3030493 - 3032001 | 57205.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_12120 | Not Available | Negative | 3032047 - 3033924 | 70166.6 |
| susc/raga family tonb-linked outer membrane protein | DW150_12125 | Not Available | Negative | 3033943 - 3037482 | 131096.0 |
| fecr family protein | DW150_12130 | Not Available | Negative | 3037600 - 3038619 | 39041.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

