Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-glucosidase | DW150_11985 | Not Available | Negative | 2990362 - 2992296 | 73609.5 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_11990 | Not Available | Negative | 2992448 - 2994274 | 68549.5 |
| tonb-dependent receptor | DW150_11995 | Not Available | Negative | 2994285 - 2997362 | 113689.0 |
| rna polymerase sigma-70 factor | DW150_12000 | Not Available | Negative | 2997489 - 2998034 | 21359.8 |
| glucuronyl hydrolase | DW150_12005 | Not Available | Negative | 2998059 - 2999285 | 46465.4 |
| helix-turn-helix domain-containing protein | DW150_12010 | Not Available | Negative | 2999521 - 3002343 | 106521.0 |
| Trna-met | Not Available | Not Available | Positive | 3002499 - 3002572 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3002631 - 3002707 | Not Available |
| hypothetical protein | DW150_12025 | Not Available | Positive | 3002911 - 3003297 | 15271.1 |
| yjgp/yjgq family permease | DW150_12030 | Not Available | Positive | 3003381 - 3005279 | 72583.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

