Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf454 domain-containing protein | DW150_11930 | Not Available | Negative | 2970506 - 2970868 | 14037.9 |
| 6-carboxytetrahydropterin synthase qued | DW150_11935 | Not Available | Positive | 2971003 - 2971335 | 12821.3 |
| radical sam protein | DW150_11940 | Not Available | Positive | 2971322 - 2971867 | 20489.5 |
| hypothetical protein | DW150_11945 | Not Available | Positive | 2972245 - 2972466 | 8908.84 |
| arsr family transcriptional regulator | DW150_11955 | Not Available | Negative | 2976169 - 2976684 | 20835.8 |
| helix-turn-helix domain-containing protein | DW150_11960 | Not Available | Negative | 2976885 - 2979698 | 106569.0 |
| six-hairpin glycosidase | DW150_11965 | Not Available | Negative | 2979857 - 2982595 | 102806.0 |
| hypothetical protein | DW150_11970 | Not Available | Negative | 2982685 - 2984286 | 60259.9 |
| beta-glucosidase | DW150_11975 | Not Available | Positive | 2984420 - 2986786 | 87784.7 |
| glycoside hydrolase | DW150_11980 | Not Available | Negative | 2986940 - 2990365 | 130591.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

