Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate esterase | DW150_11620 | Not Available | Positive | 2887730 - 2889622 | 71207.5 |
| rna polymerase sigma-70 factor | DW150_11625 | Not Available | Positive | 2889797 - 2890387 | 23285.1 |
| fecr family protein | DW150_11630 | Not Available | Positive | 2890458 - 2891471 | 39114.7 |
| susc/raga family tonb-linked outer membrane protein | DW150_11635 | Not Available | Positive | 2891721 - 2895041 | 122258.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_11640 | Not Available | Positive | 2895055 - 2896743 | 64053.9 |
| hypothetical protein | DW150_11645 | Not Available | Positive | 2896761 - 2898437 | 63048.8 |
| abc transporter atp-binding protein | DW150_11650 | Not Available | Positive | 2898835 - 2900778 | 73648.4 |
| m13 family peptidase | DW150_11655 | Not Available | Positive | 2900828 - 2902840 | 74900.8 |
| hypothetical protein | DW150_11660 | Not Available | Positive | 2902869 - 2903369 | 18979.1 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_11665 | Not Available | Positive | 2903465 - 2904700 | 45077.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

