Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease iii | DW150_11460 | Not Available | Negative | 2849858 - 2850502 | 24113.6 |
| amidinotransferase | DW150_11465 | Not Available | Positive | 2850620 - 2851540 | 35512.7 |
| amidinotransferase | DW150_11470 | Not Available | Positive | 2851563 - 2852474 | 34207.9 |
| ornithine--oxo-acid transaminase | DW150_11475 | Not Available | Positive | 2852490 - 2853725 | 45652.0 |
| vut family protein | DW150_11480 | Not Available | Positive | 2854016 - 2854702 | 25097.7 |
| 7-cyano-7-deazaguanine synthase quec | DW150_11485 | Not Available | Positive | 2854823 - 2855494 | 24863.9 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | DW150_11490 | Not Available | Positive | 2855713 - 2856168 | 17764.3 |
| Trna-ser | Not Available | Not Available | Positive | 2856256 - 2856346 | Not Available |
| class i sam-dependent methyltransferase | DW150_11500 | Not Available | Negative | 2856445 - 2857206 | 29844.9 |
| uracil-dna glycosylase | DW150_11505 | Not Available | Negative | 2857249 - 2857842 | 22434.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

