Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | DW150_11410 | Not Available | Positive | 2838782 - 2840149 | 51213.3 |
| ahpc/tsa family protein | DW150_11415 | Not Available | Positive | 2840157 - 2841335 | 44803.9 |
| aminodeoxychorismate synthase component i | DW150_11420 | Not Available | Positive | 2841941 - 2842924 | 37440.9 |
| 4-amino-4-deoxychorismate lyase | DW150_11425 | Not Available | Positive | 2842908 - 2843501 | 22693.3 |
| hypothetical protein | DW150_11430 | Not Available | Positive | 2843591 - 2844733 | 43009.4 |
| mfs transporter | DW150_11435 | Not Available | Negative | 2844730 - 2845926 | 43944.8 |
| phenylalanine--trna ligase subunit alpha | DW150_11440 | Not Available | Negative | 2846047 - 2847081 | 38981.6 |
| duf4348 domain-containing protein | DW150_11445 | Not Available | Positive | 2847193 - 2848053 | 33508.7 |
| udp-n-acetylmuramate dehydrogenase | DW150_11450 | Not Available | Positive | 2848065 - 2849078 | 37617.2 |
| mbl fold metallo-hydrolase | DW150_11455 | Not Available | Positive | 2849087 - 2849863 | 29140.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

