Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_11360 | Not Available | Positive | 2820876 - 2822885 | 75347.1 |
| hypothetical protein | DW150_11365 | Not Available | Positive | 2822893 - 2824371 | 56214.2 |
| glycoside hydrolase family 97 protein | DW150_11370 | Not Available | Positive | 2824378 - 2826354 | 74734.2 |
| response regulator | DW150_11375 | Not Available | Positive | 2826556 - 2830515 | 148919.0 |
| capa family protein | DW150_11380 | Not Available | Positive | 2830575 - 2831648 | 40933.5 |
| Trna-his | Not Available | Not Available | Positive | 2831724 - 2831800 | Not Available |
| sigma-70 family rna polymerase sigma factor | DW150_11390 | Not Available | Positive | 2831876 - 2832442 | 22575.3 |
| fecr family protein | DW150_11395 | Not Available | Positive | 2832515 - 2833597 | 41365.9 |
| susc/raga family tonb-linked outer membrane protein | DW150_11400 | Not Available | Positive | 2833641 - 2837171 | 132024.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_11405 | Not Available | Positive | 2837086 - 2838666 | 60039.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

