Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-hexosaminidase | DW150_11310 | Not Available | Negative | 2803283 - 2805706 | 91030.5 |
| duf5009 domain-containing protein | DW150_11315 | Not Available | Positive | 2805907 - 2806998 | 40468.7 |
| rna polymerase sigma-70 factor | DW150_11320 | Not Available | Positive | 2807023 - 2807583 | 21971.5 |
| hypothetical protein | DW150_11325 | Not Available | Negative | 2807642 - 2809003 | 49039.1 |
| mate family efflux transporter | DW150_11330 | Not Available | Positive | 2809343 - 2810665 | 48692.4 |
| signal recognition particle protein | DW150_11335 | Not Available | Positive | 2810764 - 2812086 | 48854.7 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | DW150_11340 | Not Available | Positive | 2812204 - 2813085 | 31607.7 |
| glycoside hydrolase family 97 protein | DW150_11345 | Not Available | Positive | 2814055 - 2815983 | 73755.0 |
| tonb-dependent receptor | DW150_11350 | Not Available | Positive | 2816017 - 2819118 | 115940.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_11355 | Not Available | Positive | 2819148 - 2820782 | 62739.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

