Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 protein | DW150_11200 | Not Available | Positive | 2769128 - 2771464 | 89419.9 |
| hybrid sensor histidine kinase/response regulator | DW150_11205 | Not Available | Positive | 2771526 - 2775800 | 163166.0 |
| hypothetical protein | DW150_11215 | Not Available | Negative | 2776314 - 2776616 | 11661.5 |
| hypothetical protein | DW150_11220 | Not Available | Positive | 2776850 - 2777317 | 16072.3 |
| hypothetical protein | DW150_11225 | Not Available | Positive | 2777319 - 2777981 | 24838.4 |
| tonb-dependent receptor | DW150_11230 | Not Available | Positive | 2777995 - 2780151 | 81356.1 |
| cobaltochelatase subunit cobn | DW150_11235 | Not Available | Positive | 2780198 - 2784673 | 166396.0 |
| hypothetical protein | DW150_11240 | Not Available | Positive | 2784680 - 2785369 | 25180.1 |
| mota/tolq/exbb proton channel family protein | DW150_11245 | Not Available | Positive | 2785384 - 2785983 | 22102.6 |
| duf2149 domain-containing protein | DW150_11250 | Not Available | Positive | 2785985 - 2786314 | 12445.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

