Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine dehydratase subunit alpha family protein | DW150_11150 | Not Available | Negative | 2750253 - 2751548 | 46131.1 |
| thiol:disulfide interchange protein | DW150_11155 | Not Available | Negative | 2751741 - 2753774 | 74719.8 |
| arac family transcriptional regulator | DW150_11160 | Not Available | Negative | 2753905 - 2755656 | 68481.8 |
| Trna-ser | Not Available | Not Available | Positive | 2755788 - 2755875 | Not Available |
| ompa family protein | DW150_11170 | Not Available | Negative | 2756555 - 2757745 | 45131.7 |
| hypothetical protein | DW150_11175 | Not Available | Negative | 2757750 - 2760557 | 104446.0 |
| helix-turn-helix domain-containing protein | DW150_11180 | Not Available | Negative | 2761085 - 2761993 | 35323.9 |
| exopolygalacturonase | DW150_11185 | Not Available | Negative | 2762330 - 2763667 | 50628.8 |
| tonb-dependent receptor | DW150_11190 | Not Available | Positive | 2764073 - 2767333 | 118465.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_11195 | Not Available | Positive | 2767349 - 2768998 | 62781.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

