Phocaeicola vulgatus strain AM13-21

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM13-21 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. This strain is host-associated, specifically found in Homo sapiens, and is characterized by a free-living biotic relationship. Its cellular arrangement consists of singles, and it does not exhibit mobility, as indicated by the absence of flagella, despite their presence in the species description. The strain is mesophilic, which suggests that it grows optimally at moderate temperatures. Phocaeicola vulgatus strain AM13-21 contains one replicon and is surrounded by two membranes, a trait commonly associated with certain bacterial groups. The accessions for this strain are cataloged under QRLF00000000.1. The ecological role of Phocaeicola vulgatus strain AM13-21 highlights its significance in the human microbiome. As a member of the gut microbiota, it likely contributes to various biological processes, including digestion and maintaining gut health. The presence of this anaerobic bacterium underscores the complexity and interdependence of microbial communities within human hosts, emphasizing the importance of understanding such organisms in the context of human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM13-21

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM13-21
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM13-21


Gene Summary

Adenine Count

1539821 bp

Thymine Count

1499100 bp

Guanine Count

1070173 bp

Cytosine Count

1133878 bp

Genome Length

5243870 bp

Protein-coding Genes

4129 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine dehydratase subunit alpha family proteinDW150_11150Not AvailableNegative2750253 - 275154846131.1
thiol:disulfide interchange proteinDW150_11155Not AvailableNegative2751741 - 275377474719.8
arac family transcriptional regulatorDW150_11160Not AvailableNegative2753905 - 275565668481.8
Trna-serNot AvailableNot AvailablePositive2755788 - 2755875Not Available
ompa family proteinDW150_11170Not AvailableNegative2756555 - 275774545131.7
hypothetical proteinDW150_11175Not AvailableNegative2757750 - 2760557104446.0
helix-turn-helix domain-containing proteinDW150_11180Not AvailableNegative2761085 - 276199335323.9
exopolygalacturonaseDW150_11185Not AvailableNegative2762330 - 276366750628.8
tonb-dependent receptorDW150_11190Not AvailablePositive2764073 - 2767333118465.0
ragb/susd family nutrient uptake outer membrane proteinDW150_11195Not AvailablePositive2767349 - 276899862781.6

Displaying genes 2141 – 2150 of 4204 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.