Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4981 domain-containing protein | DW150_10925 | Not Available | Positive | 2692353 - 2695583 | 122601.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10930 | Not Available | Negative | 2695770 - 2697587 | 68259.8 |
| tonb-dependent receptor | DW150_10935 | Not Available | Negative | 2697600 - 2700692 | 115070.0 |
| dtdp-glucose 4,6-dehydratase | DW150_10940 | Not Available | Negative | 2701163 - 2702302 | 43738.0 |
| metallophosphoesterase | DW150_10945 | Not Available | Negative | 2702351 - 2702848 | 18707.5 |
| rna degradosome polyphosphate kinase | DW150_10950 | Not Available | Positive | 2702906 - 2704960 | 80461.5 |
| hypothetical protein | DW150_10955 | Not Available | Negative | 2704986 - 2705207 | 8538.35 |
| hypothetical protein | DW150_10960 | Not Available | Negative | 2705472 - 2705666 | 7483.02 |
| hypothetical protein | DW150_10965 | Not Available | Negative | 2705666 - 2706139 | 17955.2 |
| hypothetical protein | DW150_10970 | Not Available | Positive | 2706452 - 2707075 | 23161.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

