Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_10625 | Not Available | Negative | 2600530 - 2602041 | 56713.0 |
| 1,4-beta-xylanase | DW150_10630 | Not Available | Positive | 2602303 - 2604027 | 66000.8 |
| beta-glucosidase | DW150_10635 | Not Available | Negative | 2604229 - 2606559 | 85526.4 |
| glycoside hydrolase family 95 protein | DW150_10640 | Not Available | Negative | 2606600 - 2609068 | 91774.3 |
| alpha/beta hydrolase | DW150_10645 | Not Available | Negative | 2609105 - 2610034 | 33616.8 |
| glycoside hydrolase family 28 protein | DW150_10650 | Not Available | Negative | 2610039 - 2611430 | 52628.8 |
| hybrid sensor histidine kinase/response regulator | DW150_10655 | Not Available | Negative | 2611508 - 2615833 | 164564.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10660 | Not Available | Negative | 2616085 - 2617812 | 65449.8 |
| tonb-dependent receptor | DW150_10665 | Not Available | Negative | 2617841 - 2621017 | 118235.0 |
| transposase family protein | DW150_10670 | Not Available | Positive | 2621361 - 2621697 | 13206.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

