Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DW150_10515 | Not Available | Negative | 2554889 - 2557729 | 108069.0 |
| hypothetical protein | DW150_10520 | Not Available | Negative | 2557745 - 2560327 | 98317.1 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10525 | Not Available | Negative | 2560425 - 2562122 | 63948.7 |
| tonb-dependent receptor | DW150_10530 | Not Available | Negative | 2562145 - 2565471 | 123168.0 |
| helix-turn-helix domain-containing protein | DW150_10535 | Not Available | Negative | 2565624 - 2568503 | 110375.0 |
| hypothetical protein | DW150_10540 | Not Available | Negative | 2568803 - 2569042 | 9416.17 |
| hypothetical protein | DW150_10545 | Not Available | Negative | 2569123 - 2571549 | 92763.3 |
| glycoside hydrolase | DW150_10550 | Not Available | Negative | 2571552 - 2572550 | 37749.0 |
| glycoside hydrolase family 127 protein | DW150_10555 | Not Available | Negative | 2572555 - 2574978 | 90561.3 |
| glycosyl hydrolase | DW150_10560 | Not Available | Negative | 2574998 - 2577391 | 91611.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

