Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_10410 | Not Available | Positive | 2519091 - 2520731 | 61731.4 |
| glycerophosphodiester phosphodiesterase | DW150_10415 | Not Available | Positive | 2520805 - 2521617 | 30967.8 |
| glycoside hydrolase family 92 protein | DW150_10420 | Not Available | Positive | 2521637 - 2523970 | 88790.3 |
| glycoside hydrolase family 28 protein | DW150_10425 | Not Available | Positive | 2523996 - 2525408 | 52163.1 |
| glycoside hydrolase family 92 protein | DW150_10430 | Not Available | Positive | 2525411 - 2527690 | 86168.0 |
| histidine-type phosphatase | DW150_10435 | Not Available | Positive | 2527697 - 2529436 | 66806.9 |
| response regulator | DW150_10440 | Not Available | Negative | 2529684 - 2533724 | 153149.0 |
| hypothetical protein | DW150_10445 | Not Available | Positive | 2533938 - 2535437 | 56170.5 |
| tonb-dependent receptor | DW150_10450 | Not Available | Positive | 2535460 - 2538498 | 112387.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10455 | Not Available | Positive | 2538516 - 2540174 | 63057.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

