Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DW150_10360 | Not Available | Negative | 2500666 - 2501367 | 26452.2 |
| sensor histidine kinase | DW150_10365 | Not Available | Negative | 2501393 - 2502778 | 53402.7 |
| hypothetical protein | DW150_10370 | Not Available | Positive | 2502900 - 2505197 | 87729.9 |
| pdz domain-containing protein | DW150_10375 | Not Available | Negative | 2505262 - 2506956 | 63006.6 |
| adenosine kinase | DW150_10380 | Not Available | Negative | 2507000 - 2507986 | 35301.8 |
| Trna-asn | Not Available | Not Available | Positive | 2508067 - 2508140 | Not Available |
| hybrid sensor histidine kinase/response regulator | DW150_10390 | Not Available | Positive | 2508278 - 2512498 | 162667.0 |
| alpha-n-acetylglucosaminidase | DW150_10395 | Not Available | Positive | 2512581 - 2514845 | 87076.8 |
| duf1624 domain-containing protein | DW150_10400 | Not Available | Positive | 2514853 - 2515971 | 41650.2 |
| tonb-dependent receptor | DW150_10405 | Not Available | Positive | 2516047 - 2519070 | 111949.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

