Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_10195 | Not Available | Positive | 2471052 - 2472539 | 57436.8 |
| abc transporter atp-binding protein | DW150_10200 | Not Available | Positive | 2472552 - 2473259 | 26533.8 |
| nlpc/p60 family protein | DW150_10205 | Not Available | Positive | 2473256 - 2473768 | 19402.4 |
| had family hydrolase | DW150_10210 | Not Available | Positive | 2473824 - 2475893 | 79685.0 |
| 50s ribosomal protein l21 | DW150_10215 | Not Available | Positive | 2476107 - 2476424 | 11743.4 |
| 50s ribosomal protein l27 | DW150_10220 | Not Available | Positive | 2476446 - 2476709 | 9251.19 |
| thiamine diphosphokinase | DW150_10225 | Not Available | Negative | 2476767 - 2477402 | 23805.5 |
| nicotinamide riboside transporter pnuc | DW150_10230 | Not Available | Negative | 2477389 - 2477961 | 22230.7 |
| serine--trna ligase | DW150_10235 | Not Available | Positive | 2478081 - 2479355 | 47884.3 |
| mfs transporter | DW150_10240 | Not Available | Positive | 2479495 - 2480712 | 43478.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

