Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW150_10045 | Not Available | Negative | 2434115 - 2436511 | 90094.1 |
| alpha-l-fucosidase | DW150_10050 | Not Available | Positive | 2436708 - 2438099 | 54133.3 |
| rna polymerase sigma-70 factor | DW150_10055 | Not Available | Positive | 2438275 - 2438856 | 22882.8 |
| aldehyde dehydrogenase family protein | DW150_10060 | Not Available | Negative | 2438986 - 2442306 | 124048.0 |
| hypothetical protein | DW150_10065 | Not Available | Negative | 2442677 - 2443282 | 23310.8 |
| hypothetical protein | DW150_10070 | Not Available | Positive | 2443421 - 2443654 | 9248.57 |
| yjbq family protein | DW150_10075 | Not Available | Negative | 2443684 - 2444097 | 15519.7 |
| abc transporter permease | DW150_10080 | Not Available | Negative | 2444106 - 2445308 | 44895.4 |
| atp-binding cassette domain-containing protein | DW150_10085 | Not Available | Negative | 2445305 - 2445949 | 24439.4 |
| duf4836 family protein | DW150_10090 | Not Available | Negative | 2445946 - 2447478 | 56206.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

