Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| large conductance mechanosensitive channel protein mscl | DW150_09890 | Not Available | Positive | 2391140 - 2391580 | 15733.6 |
| glutamine-hydrolyzing gmp synthase | DW150_09895 | Not Available | Positive | 2391816 - 2393369 | 57631.1 |
| glutamine-hydrolyzing gmp synthase | DW150_09900 | Not Available | Positive | 2393408 - 2394715 | 48295.5 |
| aminopeptidase p family protein | DW150_09905 | Not Available | Negative | 2394872 - 2396032 | 42504.8 |
| hypothetical protein | DW150_09910 | Not Available | Positive | 2396149 - 2396571 | 15921.7 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_09915 | Not Available | Positive | 2396694 - 2397845 | 43914.4 |
| acrb/acrd/acrf family protein | DW150_09920 | Not Available | Positive | 2397858 - 2401007 | 115622.0 |
| tolc family protein | DW150_09925 | Not Available | Positive | 2400985 - 2402442 | 54846.0 |
| glsb/yeaq/ymge family stress response membrane protein | DW150_09930 | Not Available | Negative | 2402531 - 2402782 | 8688.23 |
| efflux rnd transporter periplasmic adaptor subunit | DW150_09935 | Not Available | Positive | 2403022 - 2404047 | 37927.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

