Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase s41 | DW150_09735 | Not Available | Positive | 2356816 - 2360070 | 121882.0 |
| tyrosine--trna ligase | DW150_09740 | Not Available | Negative | 2360195 - 2361487 | 48043.5 |
| hydrolase tatd | DW150_09745 | Not Available | Negative | 2361567 - 2362196 | 24040.2 |
| membrane protein insertion efficiency factor yidd | DW150_09750 | Not Available | Negative | 2362211 - 2362432 | 8398.47 |
| ribonuclease p protein component | DW150_09755 | Not Available | Negative | 2362429 - 2362821 | 15158.8 |
| uroporphyrinogen-iii synthase | DW150_09760 | Not Available | Negative | 2362924 - 2363673 | 28619.6 |
| duf4271 domain-containing protein | DW150_09765 | Not Available | Negative | 2363678 - 2364490 | 31538.0 |
| tigr00730 family rossman fold protein | DW150_09770 | Not Available | Negative | 2364487 - 2365074 | 21529.5 |
| methionine adenosyltransferase | DW150_09775 | Not Available | Negative | 2365189 - 2366481 | 47597.8 |
| mfs transporter | DW150_09780 | Not Available | Positive | 2366759 - 2368135 | 49031.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

