Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endoribonuclease ybey | DW150_09585 | Not Available | Positive | 2325871 - 2326287 | 15838.9 |
| hypothetical protein | DW150_09590 | Not Available | Positive | 2326514 - 2327047 | 20321.5 |
| flotillin family protein | DW150_09595 | Not Available | Positive | 2327073 - 2328773 | 62430.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DW150_09600 | Not Available | Positive | 2328920 - 2330791 | 69615.1 |
| adenine phosphoribosyltransferase | DW150_09605 | Not Available | Positive | 2330851 - 2331375 | 19189.4 |
| hypothetical protein | DW150_09610 | Not Available | Negative | 2331394 - 2331603 | 7855.58 |
| excinuclease abc subunit uvrc | DW150_09615 | Not Available | Positive | 2331606 - 2333426 | 69878.8 |
| d-tyrosyl-trna(tyr) deacylase | DW150_09620 | Not Available | Positive | 2333584 - 2334036 | 16476.0 |
| pyrophosphatase | DW150_09625 | Not Available | Positive | 2334036 - 2334356 | 12366.7 |
| deoxyribose-phosphate aldolase | DW150_09630 | Not Available | Positive | 2334363 - 2335310 | 34737.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

