Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1896 domain-containing protein | DW150_09535 | Not Available | Negative | 2317497 - 2317937 | 16536.2 |
| type ia dna topoisomerase | DW150_09540 | Not Available | Negative | 2318100 - 2320205 | 77592.2 |
| hypothetical protein | DW150_09545 | Not Available | Negative | 2320264 - 2320470 | 7996.72 |
| duf4099 domain-containing protein | DW150_09550 | Not Available | Negative | 2320475 - 2321938 | 55156.5 |
| dna-binding protein | DW150_09555 | Not Available | Negative | 2322292 - 2322624 | 13182.6 |
| dna-binding protein | DW150_09560 | Not Available | Negative | 2322621 - 2322965 | 13038.7 |
| dna-binding protein | DW150_09565 | Not Available | Positive | 2323175 - 2323474 | 11760.3 |
| dna-binding protein | DW150_09570 | Not Available | Positive | 2323509 - 2323805 | 11492.8 |
| hypothetical protein | DW150_09575 | Not Available | Negative | 2323862 - 2324218 | 13401.2 |
| site-specific integrase | DW150_09580 | Not Available | Negative | 2324239 - 2325471 | 47828.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

