Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| relaxase | DW150_09480 | Not Available | Positive | 2298911 - 2300179 | 47182.1 |
| conjugal transfer protein trag | DW150_09485 | Not Available | Positive | 2300206 - 2302218 | 76683.0 |
| hypothetical protein | DW150_09490 | Not Available | Negative | 2302301 - 2303143 | 33205.6 |
| arac family transcriptional regulator | DW150_09495 | Not Available | Negative | 2303278 - 2304126 | 33014.2 |
| hypothetical protein | DW150_09500 | Not Available | Negative | 2304144 - 2305022 | 33150.9 |
| hypothetical protein | DW150_09505 | Not Available | Negative | 2305342 - 2306907 | 56606.6 |
| hypothetical protein | DW150_09510 | Not Available | Negative | 2306978 - 2308003 | 38408.2 |
| duf3575 domain-containing protein | DW150_09515 | Not Available | Negative | 2308012 - 2309463 | 55045.0 |
| arac family transcriptional regulator | DW150_09520 | Not Available | Negative | 2310089 - 2311234 | 44116.5 |
| lyttr family transcriptional regulator | DW150_09525 | Not Available | Negative | 2311350 - 2311832 | 18976.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

