Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acid phosphatase | DW150_09275 | Not Available | Negative | 2261671 - 2262603 | 35606.6 |
| tonb-dependent receptor | DW150_09280 | Not Available | Negative | 2262654 - 2265422 | 104238.0 |
| lyttr family transcriptional regulator | DW150_09285 | Not Available | Negative | 2265593 - 2266444 | 32713.9 |
| hypothetical protein | DW150_09290 | Not Available | Negative | 2266457 - 2267200 | 27516.8 |
| hypothetical protein | DW150_09295 | Not Available | Negative | 2267543 - 2268061 | 19775.7 |
| hypothetical protein | DW150_09300 | Not Available | Negative | 2268147 - 2271080 | 106846.0 |
| arac family transcriptional regulator | DW150_09305 | Not Available | Negative | 2271125 - 2271619 | 19164.3 |
| site-specific integrase | DW150_09310 | Not Available | Negative | 2272430 - 2273368 | 36160.6 |
| murein l,d-transpeptidase | DW150_09315 | Not Available | Positive | 2273576 - 2274595 | 38998.9 |
| hypothetical protein | DW150_09320 | Not Available | Positive | 2274754 - 2275395 | 23424.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

