Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | DW150_09225 | Not Available | Negative | 2248654 - 2250612 | 72651.5 |
| succinate dehydrogenase/fumarate reductase cytochrome b subunit | DW150_09230 | Not Available | Negative | 2250647 - 2251333 | 25487.5 |
| hypothetical protein | DW150_09235 | Not Available | Negative | 2251779 - 2252240 | 17018.4 |
| hypothetical protein | DW150_09240 | Not Available | Negative | 2252247 - 2254328 | 77573.8 |
| phosphatase pap2 family protein | DW150_09245 | Not Available | Positive | 2254734 - 2255345 | 22003.9 |
| s41 family peptidase | DW150_09250 | Not Available | Negative | 2255449 - 2257050 | 60827.8 |
| phosphopantetheine adenylyltransferase | DW150_09255 | Not Available | Negative | 2257053 - 2257508 | 17350.0 |
| type iia dna topoisomerase subunit b | DW150_09260 | Not Available | Negative | 2257526 - 2259403 | 71003.7 |
| n-acetyltransferase | DW150_09265 | Not Available | Negative | 2259434 - 2260570 | 43786.0 |
| sodium:calcium antiporter | DW150_09270 | Not Available | Negative | 2260645 - 2261607 | 33475.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

